Home - Workshop - Singapore

Statistical Methods in Microarray Analysis Tutorial


Institute for Mathematical Sciences, National University of Singapore
January 2-6, 2004

Yee Hwa Yang

Lectures and labs

Fri, 2 Jan 2004

bulletDesigning microarray experiments and looking for annotation information on the web.[PDF]
bullet Quality assessment and introduction to the Bioconductor project. [PDF]

Mon, 5 Jan 2004 [updated on 29 Dec 2004]

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Clustering and classification. [PDF]

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Hands-on lab: Clustering and classification using Bioconductor. 
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[PDF file]

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[R package, zip file for R version 1.8.1]

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[R Code text, for copy and paste]

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[R package, zip file for R version 2.0.1]

For the lab, please

  1. download the [Rpackage, zip file] into the the directory C:/Microarray Data".
  2. Start R 1.8.1
  3. Type and run the following 4 lines after you have started R:

            setwd("C:/Microarray Data")

            install.packages("IMSLAB.zip", lib="C:/Microarray Data", CRAN=NULL)

            .libPaths(".")

            library(IMSLAB)

  4. Follow the PDF file. 

     

Alternative [update 29 Dec, 2004]

  1. Start R 2.0.1
  2. Type and run the following lines after you have started R:

    install.packages("IMSLAB",contriburl="http://www.biostat.ucsf.edu/jean/software")        

    library(IMSLAB)

Last Updated: 2004/12/29 18:29